PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G082900.2
Common NameB456_011G082900, LOC105776596
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 160aa    MW: 17762.1 Da    PI: 6.0035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G082900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31.1e-092292855
                 AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++r++lg+f taeeAa+a+++a+  + g
  Gorai.011G082900.2  2 KRRVWLGTFETAEEAARAYDEAAILMSG 29
                        59********************987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.893137IPR001471AP2/ERF domain
PfamPF008474.5E-6227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-18237IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-11238IPR016177DNA-binding domain
CDDcd000182.83E-19238No hitNo description
SMARTSM003801.1E-11243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKRRVWLGTF ETAEEAARAY DEAAILMSGR SAKTNFPVPK NQTGDENTTT CNALSSILSE  60
KLRKCCKIPS PPSLTCLRLD TENSHIGVWQ RRAGSRSDSC WVMTVELGKK NGEVTETNKM  120
PASDEPITNK MVRQEVTDNG LNEEEKAALQ MIEELLNRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454796.11e-115PREDICTED: ethylene-responsive transcription factor WIN1 isoform X2
SwissprotQ9XI332e-56WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0D2T4I01e-115A0A0D2T4I0_G
STRINGGLYMA07G03500.16e-61(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-45ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]